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Brain Immune Atlas
Datasets
WT Homeostatic brains
Overview
Whole brain
Choroid plexus
Dura mater
Enriched subdural meninges
Pooled macrophage dataset
Full aggregate
APP/PS1 brains
Overview
9M old APP/PS1
Aggregate 16M old APPS/PS1
Conditional Irf8-KO brains
Overview
Whole brain
Choroid plexus
Pooled macrophage dataset
Dissociation-induced genes
Overview
Dura mater
Choroid plexus
Human GBM
Overview
Newly diagnosed: full
Newly diagnosed: TAM
Recurrent: full
Recurrent: TAM
Recurrent: Mg-TAM
DC
Human GBM citeSeq
Overview
TAM: DC monocytes
DC
Mouse GBM
Overview
Full aggregate
DCs
TAM
Mg-TAM
Mouse GBM citeSeq
Overview
TAM: DC monocytes
DC
LPS treatment
Overview
PBS treated
LPS treated
PBS+LPS aggregate
PBS+LPS aggregate: Lymphocytes
TBB infection
Overview
Brain infected+naive
Choroid Plexus infected
Choroid Plexus infected+naive
Infection resolution time series: marophages
Infection resolution time series: microglia
Retina nerve crush
Overview
Retinal myeloid cells
Brain MF replacement
Overview
Brain PLX treatment: Full dataset
Brain PLX treatment: Macrophages
Brain Mo-Microglia Engraftment: Full dataset
Brain Mo-Microglia Engraftment: Macrophages
Leptomeninges PLX treatment
MDP- and GMP-Mo-Mglia: Macrophages
FL-Mo-Microglia
FL-Mono scRNA and snATAC
Overview
FL-Monocytes scRNAseq: Macrophages and precursors
FL-Monocytes snATACseq: Macrophages and precursors
FL-Monocytes and BM-Monocytes scRNAseq
FL-Monocytes and BM-Monocytes snATACseq
Human Brain macrophages
Overview
Human cord and adult blood monocyte engraftment: Full dataset
Human cord and adult blood monocyte engraftment: Progenitors
Human cord and adult blood monocyte engraftment: Monocytes and macrophages
ROSMAP Human Brain Macrophages
Data download
Contact
UMAP FL-Monocytes and BM-Monocytes snATACseq
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Gene symbol (case sensitive)
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q1 as min.cutoff - q99 as max.cutoff
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gold-red
Plot gene expression
Umap plot
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