Alert	Value	Detail
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Estimated Number of Cells

4,186

Post-Normalization Mean Reads per Cell

79,583

1,815

Pre-Normalization Number of Reads: Total number of read pairs that were assigned to these libraries in demultiplexing.
Post-Normalization Number of Reads: Number of read pairs after normalizing for depth among multiple libraries.

Pre-Normalization Number of Reads	364,006,438
Post-Normalization Number of Reads	333,136,686

library 0 Fraction of Reads Kept: The fraction of reads kept for this input sample, after normalizing depth across samples to reduce batch effects.
library 1 Fraction of Reads Kept: The fraction of reads kept for this input sample, after normalizing depth across samples to reduce batch effects.
library 0 Pre-Normalization Total Reads per Cell: The mean number of total sequencing reads per cell in this input sample, prior to depth normalization.
library 1 Pre-Normalization Total Reads per Cell: The mean number of total sequencing reads per cell in this input sample, prior to depth normalization.
library 0 Pre-Normalization Confidently Mapped Barcoded Reads per Cell: The mean number of confidently-mapped-to-transcriptome, valid-barcode reads per cell in this input sample, prior to depth normalization.
library 1 Pre-Normalization Confidently Mapped Barcoded Reads per Cell: The mean number of confidently-mapped-to-transcriptome, valid-barcode reads per cell in this input sample, prior to depth normalization.

library 0 Fraction of Reads Kept	100.0%
library 1 Fraction of Reads Kept	82.7%
library 0 Pre-Normalization Total Reads per Cell	78,870
library 1 Pre-Normalization Total Reads per Cell	97,330
library 0 Pre-Normalization Confidently Mapped Barcoded Reads per Cell	53,200
library 1 Pre-Normalization Confidently Mapped Barcoded Reads per Cell	64,324

Estimated Number of Cells: The total number of barcodes associated with cell-containing partitions, estimated from the barcode count distribution.
Fraction Reads in Cells: The fraction of valid-barcode, confidently-mapped-to-transcriptome reads with cell-associated barcodes.
Pre-Normalization Mean Reads per Cell: The total number of sequenced reads divided by the number of barcodes associated with cell-containing partitions.
Post-Normalization Mean Reads per Cell: The total number of (depth-normalized) reads divided by the number of barcodes associated with cell-containing partitions.
Median Genes per Cell: The median number of genes detected per cell-associated barcode. Detection is defined as the presence of at least 1 UMI count.
Median UMI Counts per Cell: The median number of UMI counts per cell-associated barcode.

Estimated Number of Cells	4,186
Fraction Reads in Cells	94.4%
Pre-Normalization Mean Reads per Cell	86,958
Post-Normalization Mean Reads per Cell	79,583
Median Genes per Cell	1,815
Median UMI Counts per Cell	5,934

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